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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911576
Clone id YMU001_000006_F01
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000006_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTGATGTCAAGCGGTGATGTCTTGGTCCCATCTAGCCTTTGCTCTATGGGAGATCCAA
AGGTGTCAGATTCGCGAATCAATGTTTCTGCTGACTTTCTGTGTGTAGTATATATCAATG
TCGCACAGGTACTGCTCATCCAAAAAAAGGAAGCAAGAACTTCTGCACACAAGAAAAGGA
GAGGCATGCCTGAAAGAGGTGCTGCAGACGAGCTTTGCAACCAAGCGGTGGAAATGGAGA
GGCCTGACAAGTGGAAGGAAATGTTGCTGCAATCATCTTGATGTTTGTCTCTTAGGATGC
CGACGCCCGGACTGAGATGAGGAGAAATGCCCAGCCTTATGAGGAGCTCAAGCAGGGCCT
TCAATGTTTTCCACTCTGAGGAGGAAGGGTCCAAAGGGAACGTCTCCCTCACAAGACAAC
GTTGCAAATTTTGCAGCAGATGGATGGCGCAG
■■Homology search results ■■ -
sp_hit_id Q8C3S2
Definition sp|Q8C3S2|TMCO7_MOUSE Transmembrane and coiled-coil domain-containing protein 7 OS=Mus musculus
Align length 35
Score (bit) 36.2
E-value 0.067
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911576|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_F01.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C3S2|TMCO7_MOUSE Transmembrane and coiled-coil domain-conta...    36   0.067
sp|Q9C0B7|TMCO7_HUMAN Transmembrane and coiled-coil domain-conta...    34   0.25 
sp|Q1ECW2|NPAS4_DANRE Neuronal PAS domain-containing protein 4 O...    32   1.7  
sp|Q9SRV0|FB134_ARATH Putative F-box protein At3g03730 OS=Arabid...    32   1.7  
sp|P57097|MERTK_RAT Proto-oncogene tyrosine-protein kinase MER O...    31   2.2  
sp|Q8BJ34|LKAP_MOUSE Limkain-b1 OS=Mus musculus GN=Lkap PE=1 SV=2      30   3.7  
sp|Q1MQD8|ISPE_LAWIP 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   3.7  
sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Sacchar...    29   8.2  
sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Sacchar...    29   8.2  
sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus (...    29   8.2  
sp|P29452|CASP1_MOUSE Caspase-1 OS=Mus musculus GN=Casp1 PE=1 SV=1     29   8.2  

>sp|Q8C3S2|TMCO7_MOUSE Transmembrane and coiled-coil
           domain-containing protein 7 OS=Mus musculus GN=Tmco7
           PE=2 SV=1
          Length = 1079

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 16/35 (45%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = -2

Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGI-LRDK 284
           S S+ KT +++L+ ++ LG+ P+L PGVG+ LRD+
Sbjct: 141 SVSQQKTFQSVLQFVVTLGVCPYLIPGVGVPLRDR 175


>sp|Q9C0B7|TMCO7_HUMAN Transmembrane and coiled-coil
           domain-containing protein 7 OS=Homo sapiens GN=TMCO7
           PE=2 SV=2
          Length = 1094

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = -2

Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGI 296
           S S+ KT++ +L+ ++ LGI P+L PGVG+
Sbjct: 138 SISQQKTVQFVLQFVVTLGICPYLMPGVGV 167


>sp|Q1ECW2|NPAS4_DANRE Neuronal PAS domain-containing protein 4
           OS=Danio rerio GN=npas4 PE=2 SV=1
          Length = 933

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 404 DVPFGPFLLRVENIEGPA*APHKAGHFSSSQSGRRHPKRQTS-R*LQQHFLPLVRPLHFH 228
           DVP GP     E +  P  +P K        S R   K +T    L QH   L    +  
Sbjct: 627 DVPHGPLPYPPEGLLTPEASPGKQPSLPFFSSLRDREKERTEISLLAQHISTLAEGFYLD 686

Query: 227 RLVAKLVCSTSFRHA 183
            L+AKLV ST   H+
Sbjct: 687 PLLAKLVPSTLSEHS 701


>sp|Q9SRV0|FB134_ARATH Putative F-box protein At3g03730
           OS=Arabidopsis thaliana GN=At3g03730 PE=4 SV=1
          Length = 393

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -2

Query: 430 NLQRCLVRETFPLDPSSSEWKTLKALLE--LLIRLGISPHLSPGV 302
           N ++C V+  + +DP SSEW+ +K++ +  L++ LGI+     GV
Sbjct: 284 NPKKCFVK-LYKIDPKSSEWRLIKSIGDEALILDLGITVAAKDGV 327


>sp|P57097|MERTK_RAT Proto-oncogene tyrosine-protein kinase MER
           OS=Rattus norvegicus GN=Mertk PE=2 SV=1
          Length = 994

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 404 DVPF-GPFLLRVENIEGPA*APHKAG-HFSSSQSGRRHPKRQTSR*LQQHFLPLVRPLHF 231
           D PF GP    +     P  APH +G   S SQ+GR HP    +  +      L+ P+ F
Sbjct: 31  DQPFSGPLPGSLPADHRPFFAPHSSGDQLSPSQTGRSHPAHTATPQMTSAASNLLPPVAF 90

Query: 230 HRLVAKLVCS 201
              + ++V S
Sbjct: 91  KNTIGRIVLS 100


>sp|Q8BJ34|LKAP_MOUSE Limkain-b1 OS=Mus musculus GN=Lkap PE=1 SV=2
          Length = 1730

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 336 GWAFLLISVRASAS*ETNIKMIAATFPSTCQASPFPP---LGCKARLQHLFQACLS 178
           G+AF  +S   +AS   N+  +++ FPS C  S  P    L C  +L   FQ+C S
Sbjct: 150 GFAFQSVSSLQNASTRNNLVGLSSDFPSMCVESNLPSCKHLSCCGKLH--FQSCHS 203


>sp|Q1MQD8|ISPE_LAWIP 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Lawsonia intracellularis (strain PHE/MN1-00)
           GN=ispE PE=3 SV=1
          Length = 305

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 319 HLSPGVGILRDKHQDDCSNISFHLSGLSISTAWLQSSSAAPLSGMPLLFLCAEVLAS--F 146
           H +P + I   K     + +    S  +    WLQ +S  PLS   LL L AE+ A   F
Sbjct: 89  HFTPSISIYLKKGIPYGAGLGGGSSDAAALLTWLQKNSPLPLSPSKLLKLAAEIGADVPF 148

Query: 145 FWMSSTC 125
           F  +  C
Sbjct: 149 FLKNKPC 155


>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4
           OS=Saccharomyces cerevisiae GN=SPB4 PE=1 SV=1
          Length = 606

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 141 QKKEARTSAHKKRRGMPERGAADELCNQAVEMERPDKWKEMLLQS 275
           +K E +     KR+ + E   A+EL   A E    + WKE++LQ+
Sbjct: 545 RKLERKEKMSLKRKAIEEELKAEELDENAEEERIKEDWKEIVLQN 589


>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4
           OS=Saccharomyces cerevisiae (strain YJM789) GN=SPB4 PE=3
           SV=1
          Length = 606

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 141 QKKEARTSAHKKRRGMPERGAADELCNQAVEMERPDKWKEMLLQS 275
           +K E +     KR+ + E   A+EL   A E    + WKE++LQ+
Sbjct: 545 RKLERKEKMSLKRKAIEEELKAEELDENAEEERIKEDWKEIVLQN 589


>sp|Q01500|POLG_PEMVC Genome polyprotein OS=Pepper mottle virus
           (isolate California) PE=3 SV=1
          Length = 3068

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 20/95 (21%), Positives = 41/95 (43%)
 Frame = +3

Query: 57  PKVSDSRINVSADFLCVVYINVAQVLLIQKKEARTSAHKKRRGMPERGAADELCNQAVEM 236
           PK     + ++ D  C + I +A ++ I ++EA+    K R                + M
Sbjct: 614 PKGDTEMLYIALDGYCYINIYLAMLVNISEEEAKDFTKKVRD---------------IFM 658

Query: 237 ERPDKWKEMLLQSS*CLSLRMPTPGLR*GEMPSLM 341
            +  KW  ++  ++ C  LR+  P +   E+P ++
Sbjct: 659 PKLGKWPTLMDLATTCAQLRIFHPDVHDAELPRIL 693
tr_hit_id A9RTL0
Definition tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 88
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911576|Adiantum capillus-veneris mRNA, clone:
YMU001_000006_F01.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella paten...    47   4e-04
tr|B6QGJ7|B6QGJ7_PENMA Putative uncharacterized protein OS=Penic...    38   0.29 
tr|Q1LUE9|Q1LUE9_DANRE Novel protein (Fragment) OS=Danio rerio G...    37   0.65 
tr|B7QM99|B7QM99_IXOSC Putative uncharacterized protein OS=Ixode...    36   0.84 
tr|B1DK23|B1DK23_9BACL Transcriptional regulator, AraC family OS...    35   1.9  
tr|Q4SRQ7|Q4SRQ7_TETNG Chromosome undetermined SCAF14503, whole ...    34   3.2  
tr|Q5R5P8|Q5R5P8_PONAB Putative uncharacterized protein DKFZp469...    34   3.2  
tr|B7P205|B7P205_IXOSC Putative uncharacterized protein OS=Ixode...    34   3.2  
tr|B6NMI9|B6NMI9_BRAFL Putative uncharacterized protein (Fragmen...    34   3.2  
tr|B6MP39|B6MP39_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|B3L8S5|B3L8S5_PLAKH Elongation factor tu, putative OS=Plasmod...    34   4.2  
tr|B8KM64|B8KM64_9GAMM Putative uncharacterized protein OS=gamma...    33   9.3  
tr|A0YQF9|A0YQF9_9CYAN Sugar transferase OS=Lyngbya sp. PCC 8106...    33   9.3  

>tr|A9RTL0|A9RTL0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160902 PE=4 SV=1
          Length = 600

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
 Frame = -2

Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGILRDKHQDDCS----------NISFHLSGLS 236
           SSS+   +KA+LEL++R GI PHLSPGVGI  +K   + S          ++S   SG S
Sbjct: 62  SSSDTTVVKAILELVVRWGIYPHLSPGVGIPLEKRFGEKSAASAAAALKEHVSGEGSGSS 121

Query: 235 ISTAWLQSSSAAPLSGMPLLFLCAEVLA 152
           +     Q S  A     P L   AE+LA
Sbjct: 122 VGLVGAQMSKDA-----PSLLQSAELLA 144


>tr|B6QGJ7|B6QGJ7_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_085760 PE=4
           SV=1
          Length = 646

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 226 AWLQSSSAAPLSGMPLLFLCAEVLASFFWMSSTCATLIYTTHRKSAETLIRESDTFGSPI 47
           AW++S  ++P+ G+ +  LC  V  S FW +S C   I+T  R++ E L+ +     S  
Sbjct: 457 AWIESRISSPIVGLDISGLCFGV--SRFWEASLCRARIWTRLRQTQEVLLSKKSAKKSKK 514

Query: 46  EQRLDG-TKTSPL 11
              +D  + T PL
Sbjct: 515 LSEIDSESLTGPL 527


>tr|Q1LUE9|Q1LUE9_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=si:ch211-218c6.2 PE=4 SV=1
          Length = 1047

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
 Frame = -2

Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296
           PL P   S ++ KTL A+L+ ++ LG+ P+L+PGVG+
Sbjct: 101 PLPPDVLSVAQQKTLGAVLQFVVTLGLCPYLAPGVGV 137


>tr|B7QM99|B7QM99_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW014759 PE=4 SV=1
          Length = 219

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = -2

Query: 397 PLDPSSS---EWKTLKALLELLIRLGISPHLSPGVGI 296
           PL PSS    + KT++ LL+ ++ LGI P+L PGVG+
Sbjct: 109 PLPPSSLGVLQQKTVQGLLQFVVALGIYPNLLPGVGV 145


>tr|B1DK23|B1DK23_9BACL Transcriptional regulator, AraC family
           OS=Paenibacillus sp. JDR-2 GN=Pjdr2DRAFT_5474 PE=4 SV=1
          Length = 289

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 26/104 (25%), Positives = 49/104 (47%)
 Frame = -2

Query: 442 HLLQNLQRCLVRETFPLDPSSSEWKTLKALLELLIRLGISPHLSPGVGILRDKHQDDCSN 263
           HL+ ++   L + T+P       WK ++ L+ +     I  H   G  +   +HQ +   
Sbjct: 10  HLVVHIHLILDKSTYP------GWKDIRNLVNVHSLYWI--HEGRGTFLTNTEHQVEAGM 61

Query: 262 ISFHLSGLSISTAWLQSSSAAPLSGMPLLFLCAEVLASFFWMSS 131
           +++   GL +S   ++S   APL    +LF CAE++    W ++
Sbjct: 62  LAYLRPGLEMS---MRSDPEAPLRMTMVLFDCAELVYEAVWKNT 102


>tr|Q4SRQ7|Q4SRQ7_TETNG Chromosome undetermined SCAF14503, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00013797001 PE=4 SV=1
          Length = 1156

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -2

Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVG 299
           PL P   S ++ KTL + L+ ++ LG+ P+L+PGVG
Sbjct: 115 PLSPDVLSVTQQKTLASALQFVVSLGLCPYLAPGVG 150


>tr|Q5R5P8|Q5R5P8_PONAB Putative uncharacterized protein
           DKFZp469P1614 OS=Pongo abelii GN=DKFZp469P1614 PE=2 SV=1
          Length = 984

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = -2

Query: 385 SSSEWKTLKALLELLIRLGISPHLSPGVGI 296
           S S+ KT++ +L+ ++ LGI P+L PGVG+
Sbjct: 139 SISQQKTVQFVLQFVVTLGICPYLMPGVGV 168


>tr|B7P205|B7P205_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW001505 PE=4 SV=1
          Length = 145

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = -2

Query: 241 LSISTAWL-QSSSAAPLSGMPLLFLCAEVLASFFWMSSTCATLIYTTHRKSAETLIRESD 65
           LS+S+A L  +++  P+S    +FLC + L +F + +S  A  I   H  S+ETL+   +
Sbjct: 61  LSVSSATLCGAANIQPVSWYATIFLCVQSLVNFVYFASILAQTI--GHCGSSETLLERRE 118

Query: 64  TFGSPIEQRLDG 29
              S I +RL G
Sbjct: 119 RLQS-ISRRLSG 129


>tr|B6NMI9|B6NMI9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_232484 PE=4 SV=1
          Length = 1020

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296
           PL P   S ++ KTL   L+ ++ LGI P+L PGVGI
Sbjct: 80  PLSPDTLSIAQQKTLSTALQFVVCLGICPNLLPGVGI 116


>tr|B6MP39|B6MP39_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_124034 PE=4 SV=1
          Length = 1112

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -2

Query: 397 PLDP---SSSEWKTLKALLELLIRLGISPHLSPGVGI 296
           PL P   S ++ KTL   L+ ++ LGI P+L PGVGI
Sbjct: 140 PLSPDTLSIAQQKTLSTALQFVVCLGICPNLLPGVGI 176