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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP911495
Clone id YMU001_000005_F04
Library
Length 464
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACAAGTAGTATGGTGTTGCCCACACTATTGACATCAAGTGCAACATGCTTGCCTCTATT
AAAAAAGAGGACTTTNTCTCTCGGGTTCATAGTGGCAGCCATGCGATCAAACCATGGTGC
CATTAGGATATCTTTATGCTTAAGTGGAGAGATGAAGAAACCTTCTTTGTCGGAAAAGCT
TTGCACATGGAGCGTGAGCTTCCCGATCAATGGAGTGACTAAGGCTTCTTGCCCTTTGAA
AGATCCATGTGCTTTTACCATATTTCCCATATTGAAGTCACAAATTCCTAGCTTAGTAAC
TAGCTCAACAGAAATAAAGTTGTGGGTAGAGCGAAGATCAAACAGTATGAAAGCATCATG
CTCTCCTACTTTTGCCCAAGCATAAGTAAGTGGCACTACTTTGCAATGGCCTTCCTCTTT
TAGAGCTTCTGCCATGGTGGCTCTAGGAGGTCATTACATTCACT
■■Homology search results ■■ -
sp_hit_id Q3UYI5
Definition sp|Q3UYI5|RGL3_MOUSE Ral guanine nucleotide dissociation stimulator-like 3 OS=Mus musculus
Align length 53
Score (bit) 33.9
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911495|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F04.
         (464 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UYI5|RGL3_MOUSE Ral guanine nucleotide dissociation stimula...    34   0.35 
sp|Q75A06|PSF2_ASHGO DNA replication complex GINS protein PSF2 O...    32   1.0  
sp|Q9B6E7|COX1_YARLI Cytochrome c oxidase subunit 1 OS=Yarrowia ...    31   2.3  
sp|Q9VUL9|FUCTA_DROME Glycoprotein 3-alpha-L-fucosyltransferase ...    30   6.7  
sp|P41554|ACEA_RHOFA Isocitrate lyase OS=Rhodococcus fascians GN...    30   6.7  
sp|Q6FRG0|HOT1_CANGA High-osmolarity-induced transcription prote...    29   8.7  

>sp|Q3UYI5|RGL3_MOUSE Ral guanine nucleotide dissociation
           stimulator-like 3 OS=Mus musculus GN=Rgl3 PE=1 SV=2
          Length = 709

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +2

Query: 20  PTLLTSSATCLPLLKKRTXSLGFIVAAMRSNHGAIRISLCLSGEMKKPSLSEK 178
           P  LT S++ +PLL ++T     I  ++ +NHG +  S+ L+ + K PS+ ++
Sbjct: 593 PVTLTPSSSRVPLLGQQTSEARVIRVSINNNHGNLYRSILLTCQDKAPSVVQR 645


>sp|Q75A06|PSF2_ASHGO DNA replication complex GINS protein PSF2
           OS=Ashbya gossypii GN=PSF2 PE=3 SV=1
          Length = 211

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -3

Query: 435 MAEALKEEGHCKVVPLTYAWAKVGEHDAFILFDLRSTHNFISV 307
           +A  LK++G C +V    AW  + + D+FI F+L++T  F ++
Sbjct: 77  LALLLKQQGKCSIV--APAWLTIKQLDSFIEFELQNTSRFANL 117


>sp|Q9B6E7|COX1_YARLI Cytochrome c oxidase subunit 1 OS=Yarrowia
           lipolytica GN=COX1 PE=3 SV=1
          Length = 535

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +2

Query: 188 WSVSFPINGVTKASCPLKDPCAFTIFPILKSQIPSLVTSSTEIKLWVERRSNSMKASCSP 367
           W+V FP+ G+   S P  D     IF +  S   SL+ +   I  ++  R+  MK    P
Sbjct: 132 WTVYFPLAGIQSHSGPAVD---LAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVP 188

Query: 368 TFAQA 382
            FA A
Sbjct: 189 LFAWA 193


>sp|Q9VUL9|FUCTA_DROME Glycoprotein 3-alpha-L-fucosyltransferase A
           OS=Drosophila melanogaster GN=FucTA PE=1 SV=2
          Length = 503

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
 Frame = +2

Query: 143 SGEMKKPSLSEKLCTWSVSFPINGVTKASCPLKDPCAFTIFPILKSQIPSLVTSSTEIKL 322
           SG++K   L   L  W+V    +   KA CP+ D C  T    L S    ++     I  
Sbjct: 171 SGKLKTILLYNGLGPWNVKKGRDVFLKAKCPV-DTCELTANRDLASTADMILYKDHYIPT 229

Query: 323 WVERRSNSMKASC-----SPTFAQA*VSGTTLQWPSSFRASAMV 439
            + R SNS + S       P   Q       + W +++R  + +
Sbjct: 230 GIRRPSNSKQVSMLYYLECPYHTQNVKVPDAINWTATYRRDSTI 273


>sp|P41554|ACEA_RHOFA Isocitrate lyase OS=Rhodococcus fascians
           GN=icl PE=3 SV=1
          Length = 429

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -3

Query: 306 ELVTKLGICDFNMGNMVKAHG-SFKGQEALVTPLIGKLTLHVQSFSDKEGFFISPLKHKD 130
           + +T  G    N G    AHG + +G  A V        L  + F   E    + +KH+ 
Sbjct: 344 QFITLAGFHSLNYGMFDLAHGYAREGMTAFVD-------LQEREFKAAEERGFTAIKHQR 396

Query: 129 ILMAPWFDRMAATMNP 82
            + A +FDR+A T++P
Sbjct: 397 EVGAGYFDRIATTVDP 412


>sp|Q6FRG0|HOT1_CANGA High-osmolarity-induced transcription protein
           1 OS=Candida glabrata GN=HOT1 PE=3 SV=1
          Length = 658

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
 Frame = -3

Query: 378 WAKVGEHDAFILFDLRSTHNFISVELVTKLGICDFNMGNMVKAHGSFKGQEALVTPLIGK 199
           ++K+ + ++ IL DL+  ++   + L +K+      +   V A  S   Q A VT L+  
Sbjct: 89  FSKINDQNSMIL-DLKQNNSHAFLRLSSKVN----KLETHVAALASNNPQSAFVTDLLNS 143

Query: 198 LT-----------------LHVQSFSDKEGFFISPLKHKDILMAPWFDRMAATMNPRXKV 70
           +T                 L+VQ  + + GF          +M P +     T   R ++
Sbjct: 144 ITNVSSSYLRKMKHNGAENLNVQLSTHENGFVHPTPNDSPNMMGPIYYNQIETSKARGQL 203

Query: 69  LFFNRGKHVALDVNSV 22
              NR K   L+ N +
Sbjct: 204 KSLNRKKTFTLNPNGI 219
tr_hit_id Q9C7H8
Definition tr|Q9C7H8|Q9C7H8_ARATH Gypsy/Ty3 element polyprotein, putative OS=Arabidopsis thaliana
Align length 91
Score (bit) 37.4
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP911495|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_F04.
         (464 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C7H8|Q9C7H8_ARATH Gypsy/Ty3 element polyprotein, putative O...    37   0.37 
tr|A5AZ10|A5AZ10_VITVI Putative uncharacterized protein OS=Vitis...    37   0.48 
tr|A5BRL2|A5BRL2_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5AQ58|A5AQ58_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5C356|A5C356_VITVI Putative uncharacterized protein OS=Vitis...    35   1.8  
tr|A5C2E0|A5C2E0_VITVI Putative uncharacterized protein OS=Vitis...    35   1.8  
tr|A5ASY8|A5ASY8_VITVI Putative uncharacterized protein OS=Vitis...    35   1.8  
tr|O90481|O90481_9FLAV Polyprotein OS=GB virus C PE=4 SV=2             35   2.4  
tr|A5CAU1|A5CAU1_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A5BFW7|A5BFW7_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|B6SU29|B6SU29_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.1  
tr|A7QK61|A7QK61_VITVI Chromosome chr19 scaffold_111, whole geno...    34   3.1  
tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|B7FK60|B7FK60_MEDTR Putative uncharacterized protein OS=Medic...    34   4.1  
tr|B5U9W4|B5U9W4_LOTJA Putative uncharacterized protein OS=Lotus...    34   4.1  
tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus...    34   4.1  
tr|B5U9W0|B5U9W0_LOTJA Putative uncharacterized protein OS=Lotus...    34   4.1  
tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein OS=Lotus...    34   4.1  
tr|A5C7Y3|A5C7Y3_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|A5AD27|A5AD27_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|O41923|O41923_9FLAV Nonstructural polyprotein (Fragment) OS=G...    33   5.4  
tr|A7QXA1|A7QXA1_VITVI Chromosome undetermined scaffold_217, who...    33   5.4  
tr|B6KZU6|B6KZU6_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|Q3LU45|Q3LU45_9FLAV NS5A protein (Fragment) OS=GB virus C PE=...    33   7.0  
tr|B5U9V7|B5U9V7_LOTJA Putative uncharacterized protein OS=Lotus...    33   7.0  
tr|A5B2I6|A5B2I6_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A5AQE0|A5AQE0_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|B5VJP3|B5VJP3_YEAS6 Putative uncharacterized protein OS=Sacch...    33   7.0  
tr|Q96901|Q96901_9FLAV Polyprotein OS=GB virus C PE=4 SV=1             33   9.1  
tr|Q0PKS9|Q0PKS9_9FLAV NS5A (Fragment) OS=GB virus C PE=4 SV=1         33   9.1  

>tr|Q9C7H8|Q9C7H8_ARATH Gypsy/Ty3 element polyprotein, putative
           OS=Arabidopsis thaliana GN=T9I1.13 PE=4 SV=1
          Length = 1447

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -3

Query: 369 VGEHDAFILFDLRSTHNFISVELVTKLGICDFNMGNMVKAHGSFKGQEALVTPLIGKLTL 190
           V + D FIL D  STHNFI   +  KLG C      + K      G++  V   I   T 
Sbjct: 375 VDKRDLFILIDSGSTHNFIDSTVAAKLG-CHVESAGLTKV-AVADGRKLNVDGQIKGFTW 432

Query: 189 HVQSFSDKEGFFISPLKHKD-ILMAPWFDRM 100
            +QS + +    + PL+  D +L   W + +
Sbjct: 433 KLQSTTFQSDILLIPLQGVDMVLGVQWLETL 463


>tr|A5AZ10|A5AZ10_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041623 PE=4 SV=1
          Length = 522

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELVTKLGI-----CDFNM----GNMVKAHGSFKGQEA 223
           AK+G HD  +L D  STHNFIS ++V  L +       F++    G  +K  G F     
Sbjct: 324 AKIGTHDVVVLIDSGSTHNFISDKVVALLHLPVVPTAPFHVRVANGQPLKCQGRFDNIHI 383

Query: 222 LVTPLIGKLTLHVQSFSDKEGFFISPLKHKDILM-APWFDRMAATM 88
           L+  +   +T           F+  PL   D+++   W +++ + +
Sbjct: 384 LLQGIPFSIT-----------FYSLPLNGLDLVLGVQWLEQLGSVV 418


>tr|A5BRL2|A5BRL2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013478 PE=4 SV=1
          Length = 1122

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELV---------TKLGICDFNMGNMVKAHGSFKGQEA 223
           AK+G+H+  +L D  STHNFIS ++          TK        G  +K  G F+    
Sbjct: 5   AKIGQHEVVVLIDSGSTHNFISEKVADMLHLSVVPTKPFTVKVANGTPLKCQGRFEHVHV 64

Query: 222 LVTPLIGKLTLH 187
           ++  +   LTL+
Sbjct: 65  ILQGIPFSLTLY 76


>tr|A5AQ58|A5AQ58_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003711 PE=4 SV=1
          Length = 1308

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELVTKLGICDFNMGNMVKAHGSF-----KGQEALVTP 211
           A +G HD   L D  STHNFIS  +V  L +       +VK    F      G+      
Sbjct: 230 AIIGAHDVVALIDSGSTHNFISDRVVETLRL-------LVKPTTPFTVRVANGERLSCKG 282

Query: 210 LIGKLTLHVQSFSDKEGFFISPLKHKDILMA-PWFDRMAATM 88
              KLT+++Q       FF  PL   D+++   W + + + +
Sbjct: 283 KYEKLTVNLQGNEFHLDFFSVPLNGLDMVLGIQWLETLGSVV 324


>tr|A5C356|A5C356_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043958 PE=4 SV=1
          Length = 1078

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELVTKLGIC-----DFNM----GNMVKAHGSFKGQEA 223
           AKVG H+  +L D  STHNFI+  +V  L +       FN+    G+ +K  G F+    
Sbjct: 269 AKVGPHELIVLIDSGSTHNFINERIVELLQLPMVPTEPFNVKVANGDPLKCQGRFENVSV 328

Query: 222 LV 217
           L+
Sbjct: 329 LL 330


>tr|A5C2E0|A5C2E0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035856 PE=4 SV=1
          Length = 793

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELV---------TKLGICDFNMGNMVKAHGSFKGQEA 223
           AK+G+H+  +L D  STHNFIS ++          TK        G  +K  G F+    
Sbjct: 308 AKIGQHEVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRFEHVHV 367

Query: 222 LVTPLIGKLTLH 187
           ++  +   LTL+
Sbjct: 368 ILQGIPFSLTLY 379


>tr|A5ASY8|A5ASY8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014148 PE=4 SV=1
          Length = 1384

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = -3

Query: 372 KVGEHDAFILFDLRSTHNFISVELVTKLGI---------CDFNMGNMVKAHGSFKGQEAL 220
           K+G+H+  +L D  STHNFIS ++V  L +              G  +K  G F+    +
Sbjct: 417 KIGQHEVVVLIDSGSTHNFISEKVVDMLHLPXVPTDPFTVKVANGTPLKCQGRFEHVHVI 476

Query: 219 VTPLIGKLTLH 187
           +  +   LTL+
Sbjct: 477 LQGIPFSLTLY 487


>tr|O90481|O90481_9FLAV Polyprotein OS=GB virus C PE=4 SV=2
          Length = 2873

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
 Frame = +2

Query: 140  LSGEMKKPSLSEKLCT--WSVSFPIN--GVTKASCPLKDPCAFTIFPILKSQIPSLVTSS 307
            L+G++K+P  S KLC   W  + P+N  G  + S PL  P    + P   S    +V + 
Sbjct: 1961 LNGQLKEPVYSTKLCRHYWMGTVPVNMLGYGETS-PLLAPDTPKVVPFGTSGWAEVVVTP 2019

Query: 308  TEIKLWVERRSNSMKASCSPTFAQA-----*VSGTTLQWPSSFRASAMV 439
            T +   V RR+++ K       + A      V G  + W +  RA AMV
Sbjct: 2020 THV---VIRRTSAYKLLRQQILSAAVAEPYYVDGIPVSWDADARAPAMV 2065


>tr|A5CAU1|A5CAU1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011412 PE=4 SV=1
          Length = 736

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 26/93 (27%), Positives = 40/93 (43%)
 Frame = -3

Query: 384 YAWAKVGEHDAFILFDLRSTHNFISVELVTKLGICDFNMGNMVKAHGSFKGQEALVTPLI 205
           Y  A V       L D  +THNF+S +   +L +     G  +KA  S       V    
Sbjct: 2   YVEALVNGKTIQALVDTNATHNFVSEDEAKRLKLQTSKEGGWLKAVNSTTKPSHRVA--- 58

Query: 204 GKLTLHVQSFSDKEGFFISPLKHKDILMAPWFD 106
            ++T+H+ S+  K  F ++P+   D  M P  D
Sbjct: 59  RRVTMHIGSWEGKVDFTVAPM--DDFKMVPGMD 89


>tr|A5BFW7|A5BFW7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002403 PE=4 SV=1
          Length = 770

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -3

Query: 375 AKVGEHDAFILFDLRSTHNFISVELV 298
           A++G H+  +L D RSTHNF+S ++V
Sbjct: 289 AQIGHHEIKVLIDRRSTHNFLSAKMV 314