BP911450
Clone id YMU001_000005_B04
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000005_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTCGTACGTAAGGTTTTGTGATGAATTTCCTGATAGAGAGAAGGG
TCTTTCATTACAAAATAAATGTATACACTGGTGATGAGTTAGTGGTTAGCATCACCATGA
TTCCCTTGCATTTTCTTACCCATGGTACAAAGAACCAGCTTCATCTGGTAAAAGAACCTT
GACAATTCCCACACAAGCAAGCAAGCGTCGTCAAAAGAGCACACAAATGTAGAGTTATTA
CAACAAATCTTCAAGGGAATCCCGCTGGACGGAAGAGCAACTTTCCTTCTCGAAAGAAGC
ATCTTCTTCCTCGACGACTTCCTCAAGACTCTCTAAAGAGGCATCATCTTCACCTATTGC
TGCCTTTTGCCTAGCTCTTCAGCTCCACTGTGATCGTTTGTGGACGAGACCTCAAGATTT
CTTGAGGAAGCTGCTGAATTGCGTGTTTGCACGATTGGTGTGAGCCCTCCTTTGCGTCCT
AGCGGAGGAAGGTTTCCCGTTAACGACGCCGATGAGGATCTC
■■Homology search results ■■ -
sp_hit_id P09278
Definition sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster virus (strain Dumas)
Align length 93
Score (bit) 31.2
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911450|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B04.
(505 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster v... 31 2.9
sp|Q9N0E1|AACS_MACFA Acetoacetyl-CoA synthetase OS=Macaca fascic... 30 4.9
sp|Q86V21|AACS_HUMAN Acetoacetyl-CoA synthetase OS=Homo sapiens ... 30 4.9
sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS... 30 8.3

>sp|P09278|TEGU_VZVD Large tegument protein OS=Varicella-zoster virus
(strain Dumas) GN=22 PE=3 SV=1
Length = 2763

Score = 31.2 bits (69), Expect = 2.9
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1

Query: 31 IERRVFHYKINVYTGDELVVSITMIPLHFLTHGTKNQLHLVKEP*QFPHKQASVVKRAHK 210
I+RR + + D + + + P+H L +L L+K+ V++ A +
Sbjct: 2009 IQRRGDVRVLELTLSDIVTILVATTPVHLLNFA---RLDLIKQHEYMARTLRPVIEAAFR 2065

Query: 211 CRVITTNLQGNPAGRKSNF--PSRKKHLLPRRL 303
R++ +L G+P G F + KH LP L
Sbjct: 2066 GRLLVRSLDGDPKGNARAFFNAAPSKHKLPLAL 2098


>sp|Q9N0E1|AACS_MACFA Acetoacetyl-CoA synthetase OS=Macaca
fascicularis GN=AACS PE=2 SV=1
Length = 672

Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Frame = +2

Query: 191 SSKEHTNVELLQQIFKGIP----------LDGRATFLLER--SIFFLDDFLKT 313
+ KEH+++E LQQ+ KG+P + R L + + FLDDFL T
Sbjct: 213 NGKEHSHMEKLQQVVKGLPDLKKVVVIPYVSSREKIDLSKIPNSVFLDDFLAT 265


>sp|Q86V21|AACS_HUMAN Acetoacetyl-CoA synthetase OS=Homo sapiens
GN=AACS PE=1 SV=1
Length = 672

Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Frame = +2

Query: 191 SSKEHTNVELLQQIFKGIP----------LDGRATFLLER--SIFFLDDFLKT 313
+ KEH ++E LQQ+ KG+P + R L + + FLDDFL T
Sbjct: 213 NGKEHNHMEKLQQVVKGLPDLKKVVVIPYVSSRENIDLSKIPNSVFLDDFLAT 265


>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B
OS=Homo sapiens GN=PRPF40B PE=1 SV=1
Length = 871

Score = 29.6 bits (65), Expect = 8.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +3

Query: 126 WYKEPASSGKRTLTIPTQASKRRQKSTQM*SYYNKSSRESRWT 254
W K K L + K + T YYN S+ESRWT
Sbjct: 120 WEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWT 162


tr_hit_id A9SCW4
Definition tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 98
Score (bit) 33.1
E-value 7.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP911450|Adiantum capillus-veneris mRNA, clone:
YMU001_000005_B04.
(505 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment) OS=Physcomit... 33 7.8

>tr|A9SCW4|A9SCW4_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_127743 PE=4 SV=1
Length = 288

Score = 33.1 bits (74), Expect = 7.8
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = -2

Query: 477 NLPPLGRKGGLTPIVQTRNSAASSRNLEVSSTNDHSGAEELGKRQQ*VKMMPL*RVLRKS 298
N+ + R G ++ S AS RN+E+ T E++ + + ++R+
Sbjct: 190 NVKQISRLTGCKLTIRDHESNASMRNVEMEGTY-----EQIERASE---------MVRQF 235

Query: 297 SRKKMLLSRRKVALPSSGIPLKICCNNSTFVCSFDDAC 184
K ++ +R A+ S K+C N S C+F D C
Sbjct: 236 LSHKEVVPQRVAAIASHNFKTKLCENFSQGTCTFADRC 273